miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|30082759|gb|CB880767.1|CB880767 CCGTCCATCATCAACGCAGTTTTCCCACGAACAACATCGCACCATGCATACATCGTACTCCCTCCGTTCCTAAATATAAG
TCTTTTTTTTAGAGGTTTCATTATAGGACTACATACTGATGTATTTAGACATACTTTAAAGTATAGATTCACTCATTTTG
TTTTGTATGTAGTCTCTTAGTGAAATCTCTTAAAAGACTTATATTTAGGAACGGAGGGAGTACATCACTGACAATAATTT
TCGACTGTTCAATGTTACTAGTACTACTGATAAAGTATGTGATAACAGCAGAGAACCAGAGACCAACGTAGACCGCGAGC
AGCGCTTAGAGTTACGTCGGCGGTCACTCGGTTGTGGCTGCAGCGGCGGCCTTGTCGAGGGTGTTGGCGATGTCGATGAC
GAATCGATACCTGACGTCAGCCTTGGCAAGGCGCTCCATCGCTGTGTTCACGTACTCCGCGCTTATCACCTCGATGTCTG
CCGTCACGCCGTGCTTCGCCGCGAGGTCCAGCATCTCCTGGGTGTCCCTCATGCCGCCGATGCAGCTCCCGG




Most similar to sp|Q0J6T3|CADH5_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q0J6T3|CADH5_ORYSJ Putative cinnamyl alcohol dehydrogenase 5
           OS=Oryza sativa subsp. japonica GN=CAD5 PE=3 SV=2
          Length = 354

 Score =  100 bits (249), Expect = 6e-21
 Identities = 51/58 (87%), Positives = 54/58 (93%)
 Frame = -3

Query: 550 GSCIGGMRDTQEMLDLAAKHGVTADIEVISAEYVNTAMERLAKADVRYRFVIDIANTL 377
           GSCIGGM DT EM+DLAAKHGVTA+IEVI A+YVNTAMERLAKADVRYRFVIDI NTL
Sbjct: 293 GSCIGGMADT-EMIDLAAKHGVTAEIEVIGADYVNTAMERLAKADVRYRFVIDIGNTL 349